Stream: community

Topic: Configuration of OAI-PMH server

view this post on Zulip Adília Isabel Domingues da Cruz Alves (Nov 21 2023 at 11:33):

Good morning.
I configured OAI-PMH server for dataverse OAI_PMHserver.jpg but the URL https://dados.ipb.pt/oai returns an error.
internalerror.jpg

What can I do to solve this problem?
Thank you in advance.

view this post on Zulip Philip Durbin 🚀 (Nov 21 2023 at 13:40):

Do you see io.gdcc.xoai.exceptions.BadVerbException: No argument 'verb' found in server.log? That's what I see.

It's coming from here: https://github.com/gdcc/xoai/blob/xoai-5.2.0/xoai-data-provider/src/main/java/io/gdcc/xoai/dataprovider/request/RequestBuilder.java#L119

view this post on Zulip Philip Durbin 🚀 (Nov 21 2023 at 13:40):

@Oliver Bertuch any thought on this? Some kind of error makes sense (no verb) but a 500?

view this post on Zulip Adília Isabel Domingues da Cruz Alves (Nov 24 2023 at 16:12):

Philip Durbin said:

Oliver Bertuch any thought on this? Some kind of error makes sense (no verb) but a 500?

Hello again.
I checked logs and I saw that, when OAI sets were exported, a error log was created with the name 'export[timestamp].log'. In this log file I can see that no database was exported, because I can see the message 'Datasets exported successfully: 0'. How can I check what is hapening?
Thanks again :-)

And yes, in Server log I can see
'[Payara 5.2022.3] [WARNING] [] [javax.enterprise.web] [tid: _ThreadID=74 _ThreadName=http-thread-pool::http-listener-1(2)>
StandardWrapperValve[OAIServlet]: Servlet.service() for servlet OAIServlet threw exception
io.gdcc.xoai.exceptions.BadVerbException: No argument 'verb' found
at io.gdcc.xoai.dataprovider.request.RequestBuilder.buildRawRequest(RequestBuilder.java:119)
at edu.harvard.iq.dataverse.harvest.server.web.servlet.OAIServlet.processRequest(OAIServlet.java:250)
at edu.harvard.iq.dataverse.harvest.server.web.servlet.OAIServlet.doGet(OAIServlet.java:235)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:645)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:750)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1637)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:201)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
at java.base/java.lang.Thread.run(Thread.java:829)
]]
' ,

view this post on Zulip Adília Isabel Domingues da Cruz Alves (Nov 24 2023 at 16:57):

Philip Durbin said:

Do you see io.gdcc.xoai.exceptions.BadVerbException: No argument 'verb' found in server.log? That's what I see.

It's coming from here: https://github.com/gdcc/xoai/blob/xoai-5.2.0/xoai-data-provider/src/main/java/io/gdcc/xoai/dataprovider/request/RequestBuilder.java#L119

Yes, in Server log I can see
'[Payara 5.2022.3] [WARNING] [] [javax.enterprise.web] [tid: _ThreadID=74 _ThreadName=http-thread-pool::http-listener-1(2)>
StandardWrapperValve[OAIServlet]: Servlet.service() for servlet OAIServlet threw exception
io.gdcc.xoai.exceptions.BadVerbException: No argument 'verb' found
at io.gdcc.xoai.dataprovider.request.RequestBuilder.buildRawRequest(RequestBuilder.java:119)
at edu.harvard.iq.dataverse.harvest.server.web.servlet.OAIServlet.processRequest(OAIServlet.java:250)
at edu.harvard.iq.dataverse.harvest.server.web.servlet.OAIServlet.doGet(OAIServlet.java:235)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:645)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:750)
at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1637)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:372)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:239)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:201)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
at java.base/java.lang.Thread.run(Thread.java:829)
]]
'

view this post on Zulip Philip Durbin 🚀 (Nov 28 2023 at 14:57):

@Adília Isabel Domingues da Cruz Alves sorry, I think I'm getting a little confused. Your current problem is that zero datasets are exported in your OAI-PHM set? Are any other sets working?

Last updated: Nov 01 2025 at 14:11 UTC